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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_123166_127596_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123166 - 127596
Intron Length:
4431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTCTCTCAACT
Flanking Amino Acid:
QENIYSNKCTGETCAVPNDD
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
68.8
0.42
0.8
59.7
35.7
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
73.2
0.81
1.5
89.73
34

Associated Gene:

Gene:
GLDN
Ensembl Gene ID:
ENSAPLG00000008175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008483
113675 - 132533
18859