About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1233014_1233105_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1233014 - 1233105
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
ALDSEERNCTDIDECRISPD
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950