About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1235148_1235959_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1235148 - 1235959
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
AACTGGCCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TATTGTTCAACT
Flanking Amino Acid:
TLDASGRTCLDIRLESCYLQ
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
55.9
0.13
1
47.7
39.6
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
60.3
0.4
2
81.34
40.3

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950