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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12382432_12413809_F

Intron Information:

Intron Rank:
149541
Intron Class:
major
Intron Phase:
Intron Coordinates:
12382432 - 12413809
Intron Length:
31378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTTTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
66.9
42.9
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
70.2
0.72
1.4
85.92
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030474
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043352
12382225 - 12415921
33697