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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1238405_1239766_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1238405 - 1239766
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACTC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTCTAAAATT
Flanking Amino Acid:
WGSPCTPCERDPICQKGYSR
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.9
41.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
42.1
-0.9
3.2
59.9
44.7
Minor BPS
49.4
0.03
1.9
69.44
42.1

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950