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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1239905_1240873_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1239905 - 1240873
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCCTAACA
Flanking Amino Acid:
TLDTTRTICIETVKGTCWQN
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.2
0.7
0.8
77.5
29.9
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
69.1
0.6
1.7
79.54
36.7

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950