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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1240994_1241678_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1240994 - 1241678
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGGCACTAACA
Flanking Amino Acid:
VYTPDLKTCEDIDECESNPC
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.7
0.71
0.8
74
36.7
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
47.5
-0.1
2.1
60.99
44.8

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950