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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12414018_12415089_F

Intron Information:

Intron Rank:
149542
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12414018 - 12415089
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGCAAGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAA
U12 Branch Point Sequence:
CTCCCATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
53.5
0.09
1.4
67
39.8
Major PPT
48.3
-0
1.2
46.8
39.2
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
48.5
-0
1.9
66.07
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030474
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043352
12382225 - 12415921
33697