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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12415259_12415447_F

Intron Information:

Intron Rank:
149543
Intron Class:
major
Intron Phase:
Intron Coordinates:
12415259 - 12415447
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.1
0.56
1
68.4
41.9
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
48.6
-0.1
2
66.33
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030474
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043352
12382225 - 12415921
33697