About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12415259_12419192_F

Intron Information:

Intron Rank:
149538
Intron Class:
major
Intron Phase:
Intron Coordinates:
12415259 - 12419192
Intron Length:
3934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTCTTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.4
0.55
0.9
74.6
36
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
61.4
0.44
1.6
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030474
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032374
12414983 - 12437728
22746