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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1241805_1244968_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1241805 - 1244968
Intron Length:
3164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
ATTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTTCTTAAAA
Flanking Amino Acid:
EVDSTGKNCIDIDECALNML
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.1
34.1
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.8
78
34.5
Minor 5ss
41.4
-1
2.9
54.4
44
Minor BPS
69
0.59
1.4
71.75
40.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950