About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12438407_12439570_F

Intron Information:

Intron Rank:
149546
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12438407 - 12439570
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTATTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.3
0.62
0.9
73.9
40.2
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
61.5
0.44
1.6
81.33
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030474
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047030
12422883 - 12440152
17270