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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1245095_1246029_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1245095 - 1246029
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
AACATTTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTAACA
Flanking Amino Acid:
SGTGMTAGGNDINECLLDTD
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.7
0.33
1
59.1
41.1
Minor 5ss
38.4
-1.3
3
45.7
43.4
Minor BPS
75.7
0.8
1.4
82.86
31

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950