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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12457050_12460745_R

Intron Information:

Intron Rank:
133671
Intron Class:
major
Intron Phase:
Intron Coordinates:
12457050 - 12460745
Intron Length:
3696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
TATTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACCTACTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
71.8
39.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.8
0.85
0.7
85.4
28.9
Minor 5ss
34.5
-1.8
3
41.9
39
Minor BPS
48.4
-0.1
1.7
56.11
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024201
12455885 - 12460898
5014