About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12460852_12461976_R

Intron Information:

Intron Rank:
133672
Intron Class:
major
Intron Phase:
Intron Coordinates:
12460852 - 12461976
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTATCATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTACATTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
70.6
0.46
1
65.3
40
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
55.4
0.15
1.9
72.85
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024758
12460696 - 12462152
1457