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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1248913_1250103_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1248913 - 1250103
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTGATAATGATA
Flanking Amino Acid:
AVGLDGRVCVDTHMRSTCYG
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
44.1
-0.4
1.8
56.45
36.5

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950