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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12507087_12508272_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12507087 - 12508272
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGGACCATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTGGAC
U12 Branch Point Sequence:
GTGTGCTGGACC
Flanking Amino Acid:
SIYTYQEPPHSNSDEDISED
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
42.6
-0.4
1.4
36.7
42.3
Major PPT
57.4
0.17
1
52.6
41.8
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
49.6
-0
2
63.22
42.5

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715
ENSAPLT00000030797
12506977 - 12528691
21715