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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12509555_12512770_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12509555 - 12512770
Intron Length:
3216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATAT
Flanking Amino Acid:
TRGYQAAGAELWRKFLRLAY
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
54.6
0.22
1.8
76.72
39.5

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715