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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12514772_12514863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12514772 - 12514863
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAAGGCTA
5'SS Class:
major
3'SS Sequence:
CTGCTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTGCCCTTACTT
Flanking Amino Acid:
QDLDTIWSLGGYLQYSVLFY
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.2
70.8
39.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.9
0.65
0.8
73.1
31.8
Minor 5ss
23.6
-3
4.1
30.1
43
Minor BPS
59.9
0.39
1.7
72.86
44.5

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715