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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12515007_12516467_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12515007 - 12516467
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CTTCAACAACTT
Flanking Amino Acid:
FAYSFIILLKKMAKNSRMSL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
80
0.68
1
73.1
42.1
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
33.7
-1.1
2.1
52.02
42.6

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715
ENSAPLT00000030797
12506977 - 12528691
21715