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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12516616_12517607_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12516616 - 12517607
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGCTACTAAAAT
Flanking Amino Acid:
KAAAIVNSIREAILEEQEKK
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
77.3
0.61
1
75.7
38.5
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
50.6
0.1
2
71.06
45.2

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715