Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12517981_12518760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12517981 - 12518760

Intron Length:

780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACAAAA

U12 Branch Point Sequence:

AAAGCTACAAAA

Flanking Amino Acid:

KELTLWEKNEVSVVVSLITM

Intron Amino Acid Position:

368

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

73.4

38.9

Major BPS

60.3

0.26

65.5

Major PPT

81.4

0.71

0.8

77.2

31.6

Minor 5ss

39.5

-1.2

53.1

44.1

Minor BPS

41.1

-0.6

1.8

46.72

35.9

Associated Gene:

Gene:

TMC3

Ensembl Gene ID:

ENSAPLG00000011080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030797

12506977 - 12528691

21715

ENSAPLT00000030429

12506977 - 12528691

21715

ENSAPLT00000011590

12506977 - 12528691

21715