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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12518871_12519022_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12518871 - 12519022
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TAACCTTTATCT
Flanking Amino Acid:
PRTTLRFQLARVLVLYLGNL
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.4
36.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
61.8
0.45
1.6
75.76
40.5

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715