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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12519102_12519620_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12519102 - 12519620
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTTTCAGGACA
Flanking Amino Acid:
LDKVNIMSDAGSKANSDASN
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
50.4
0
1.8
67.63
38.6

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715