Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12523413_12525328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12523413 - 12525328

Intron Length:

1916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCACTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TGATTTATAATC

Flanking Amino Acid:

YKPSLNCGPFSMLIYYLQSI

Intron Amino Acid Position:

656

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

78.9

0.65

0.8

70.6

35.1

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

55.2

0.14

1.5

64.34

35.1

Associated Gene:

Gene:

TMC3

Ensembl Gene ID:

ENSAPLG00000011080

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030797

12506977 - 12528691

21715