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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12527020_12527829_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12527020 - 12527829
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATCTCTCAACA
Flanking Amino Acid:
QKSRNNHTTNRYPSVVHGSA
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.63
1
79
33.3
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
65.5
0.48
1.5
74.46
36.4

Associated Gene:

Gene:
TMC3
Ensembl Gene ID:
ENSAPLG00000011080
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030797
12506977 - 12528691
21715
ENSAPLT00000030429
12506977 - 12528691
21715
ENSAPLT00000011590
12506977 - 12528691
21715