Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12527622_12529732_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12527622 - 12529732

Intron Length:

2111

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAT|GCCATTTCA

5'SS Class:

weak_major

3'SS Sequence:

GGGGCTCGCTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATGGAC

U12 Branch Point Sequence:

CGGCCATGGACT

Flanking Amino Acid:

EHALKGQRSDAAAAKIGQYR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.3

0.2

1.4

57.6

40.9

Major BPS

46.6

-0.2

1.3

44.4

38.7

Major PPT

43.3

-0.3

1.7

42.6

43.2

Minor 5ss

28.1

-2.5

3.7

38.1

39.6

Minor BPS

-0.2

1.8

59.61

43.3

Associated Gene:

Gene:

STARD5

Ensembl Gene ID:

ENSAPLG00000018308

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021624

12527538 - 12533235

5698