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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12531636_12532434_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12531636 - 12532434
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATAATT
Flanking Amino Acid:
QYEDGTMLSAATNVEHPQCP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
68.5
0.66
1.6
84.17
37

Associated Gene:

Gene:
STARD5
Ensembl Gene ID:
ENSAPLG00000018308
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029793
12526622 - 12535827
9206
ENSAPLT00000022156
12531173 - 12533235
2063
ENSAPLT00000021624
12527538 - 12533235
5698