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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12532529_12535649_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12532529 - 12535649
Intron Length:
3121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCAGAAGGTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCAAAATA
Flanking Amino Acid:
PCGCFCIPLPGLGSKCPCCS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
44.5
-0.3
1.2
38.5
42.7
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
52.4
0.07
1.9
68.9
37.6

Associated Gene:

Gene:
STARD5
Ensembl Gene ID:
ENSAPLG00000018308
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029793
12526622 - 12535827
9206