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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12536573_12536826_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12536573 - 12536826
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAC
5'SS Class:
major
3'SS Sequence:
TACCCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
KPIVINRIFKGTALEQSSTV
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
63.9
42.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.4
0.41
0.8
59
32.5
Minor 5ss
36.6
-1.5
3.3
50.1
46.5
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041911
12536379 - 12541789
5411