Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12536953_12537574_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

12536953 - 12537574

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CATTTATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TTTCCATTTATT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

29.6

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

84.3

0.77

0.8

81.4

34.8

Minor 5ss

40.6

-1

2.7

47.5

42.3

Minor BPS

59.8

0.39

1.9

83.13

37.4

Associated Gene:

Gene:

IL16

Ensembl Gene ID:

ENSAPLG00000011013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041911

12536379 - 12541789

5411

ENSAPLT00000011509

12536827 - 12571639

34813