Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12539474_12540824_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12539474 - 12540824

Intron Length:

1351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGATAC

5'SS Class:

strong_major

3'SS Sequence:

CAATGGGAAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTACTTTTTATT

Flanking Amino Acid:

NHHMDTGFSLNLSELREYTV

Intron Amino Acid Position:

1180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

0.9

74.9

29.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

48.8

-0

1.1

39.5

42.4

Minor 5ss

39.9

-1.1

3.1

39.9

Minor BPS

55.4

0.25

1.6

73.31

38.2

Associated Gene:

Gene:

IL16

Ensembl Gene ID:

ENSAPLG00000011013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041911

12536379 - 12541789

5411

ENSAPLT00000011509

12536827 - 12571639

34813