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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12541921_12543086_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12541921 - 12543086
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTCTCTAATA
Flanking Amino Acid:
GRDQERKSNLGSLLSSIQRP
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
0.9
70.2
34.1
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
65.4
0.48
1.7
75.53
36.4

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813