Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12543229_12545548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12543229 - 12545548

Intron Length:

2320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCAA

5'SS Class:

major

3'SS Sequence:

CCTGTTTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

CATGCTTCAATT

Flanking Amino Acid:

VAISPSANLQQEVREPMLEG

Intron Amino Acid Position:

768

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

68.2

38.4

Major BPS

73.9

0.59

30.2

Major PPT

77.7

0.62

0.9

75.9

Minor 5ss

29.4

-2.4

3.3

37.9

46.9

Minor BPS

54.6

0.22

1.7

68.76

42.9

Associated Gene:

Gene:

IL16

Ensembl Gene ID:

ENSAPLG00000011013

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011509

12536827 - 12571639

34813