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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12546025_12546512_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12546025 - 12546512
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTATCTGAATA
Flanking Amino Acid:
GRDRHQWSTEGVKKLDTSWH
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.4
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.6
0.49
1
65
40.4
Minor 5ss
35.7
-1.6
3.3
47.1
48.3
Minor BPS
61.1
0.35
1.4
69.65
36.3

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813