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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12547664_12548896_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12547664 - 12548896
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
TATATCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
GSVAHMDGRLRCGDEIIEIN
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
0.8
70.8
35.6
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813