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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12550240_12550329_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12550240 - 12550329
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATGTAC
5'SS Class:
major
3'SS Sequence:
TTCTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
THYDALQKFKAKKGLLTLTV
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64
36.6
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
33.5
-1.9
3.1
41.9
44.9
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813