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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12550718_12551837_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12550718 - 12551837
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TGTTCCATAAAT
Flanking Amino Acid:
NIVLMKGQGKGLGFSIVGGK
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
61
0.25
1
60.7
39
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
69.9
0.7
1.7
87.74
36.6

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813