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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12557207_12557948_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12557207 - 12557948
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTGTTTTTTAAG
Flanking Amino Acid:
CKVPAGSTANRDGCLSPRDE
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
81.9
0.72
1
86.9
31.1
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
49.7
-0.1
1.8
59.4
43

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813