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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12558086_12566863_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12558086 - 12566863
Intron Length:
8778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCCTGAATC
Flanking Amino Acid:
NNMRRKLLIKDSCICRLCTT
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67.3
0.39
1
66.6
38.4
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
74.7
0.76
1.4
79.19
36.3

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813