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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12567276_12571585_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12567276 - 12571585
Intron Length:
4310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTCG
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATATTACAACT
Flanking Amino Acid:
LQESGLSASLLIFSTREAEK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
67.1
38.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
63.3
0.3
1.7
72.9
32
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
48.7
-0
1.8
71
39.6

Associated Gene:

Gene:
IL16
Ensembl Gene ID:
ENSAPLG00000011013
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011509
12536827 - 12571639
34813