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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1257350_1261169_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1257350 - 1261169
Intron Length:
3820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AAGTCCTAAAAC
Flanking Amino Acid:
QSTPTRTECRDIDECLQNGR
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
78.1
0.63
1
73.5
41.8
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
55.8
0.16
1.8
63.41
41.7

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950