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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12595910_12596972_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12595910 - 12596972
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
GTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTTGTTATTT
Flanking Amino Acid:
RLEYEGSPVPANSKVIITHC
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
74
36.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.3
0.79
0.9
77
41.9
Minor 5ss
38.1
-1.3
3.2
59.5
44.6
Minor BPS
50.7
0.1
2.2
75.8
41.6

Associated Gene:

Gene:
CFAP161
Ensembl Gene ID:
ENSAPLG00000011002
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011450
12594691 - 12599845
5155