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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12597132_12597838_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12597132 - 12597838
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTCGTTAATA
Flanking Amino Acid:
GTTGGFSDPMFYLASDHKSF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
67.3
0.54
2
78.89
38.3

Associated Gene:

Gene:
CFAP161
Ensembl Gene ID:
ENSAPLG00000011002
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011450
12594691 - 12599845
5155