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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12597924_12599151_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12597924 - 12599151
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGTAC
5'SS Class:
major
3'SS Sequence:
ACAATTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTACAATT
Flanking Amino Acid:
PVGRNTFCLLSVDGSSVGEP
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
63.9
36.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
63.4
0.3
1
58.7
41
Minor 5ss
39.5
-1.2
3
50
46.7
Minor BPS
49.8
0.07
1.8
72.15
39.6

Associated Gene:

Gene:
CFAP161
Ensembl Gene ID:
ENSAPLG00000011002
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011450
12594691 - 12599845
5155