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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12599388_12599561_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12599388 - 12599561
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTATTTTGATT
Flanking Amino Acid:
GRLEENLLKKIKLSVSKDGF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.4
0.57
1
74.6
40.1
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
62.3
0.47
1.2
75.52
35.3

Associated Gene:

Gene:
CFAP161
Ensembl Gene ID:
ENSAPLG00000011002
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011450
12594691 - 12599845
5155