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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12599652_12599782_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12599652 - 12599782
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCGCG
5'SS Class:
major
3'SS Sequence:
CCTTCGCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAA
U12 Branch Point Sequence:
CCTTCGCAAACA
Flanking Amino Acid:
NWNEAAVLEEDRMRDFIRKR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
44.5
Major BPS
60.8
0.27
1.4
71.6
36.4
Major PPT
63.8
0.31
1
58.3
36.3
Minor 5ss
42.2
-0.9
3.2
56.7
47.6
Minor BPS
43.4
-0.5
2.5
59.22
46.6

Associated Gene:

Gene:
CFAP161
Ensembl Gene ID:
ENSAPLG00000011002
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011450
12594691 - 12599845
5155