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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1262239_1263545_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1262239 - 1263545
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CAACTTTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTTTCCAACT
Flanking Amino Acid:
VYPSRAPPPHVILPVNFTDY
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.5
0.66
0.9
76.7
36.9
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
55.4
0.25
1.8
79
37

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950