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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1263705_1267029_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1263705 - 1267029
Intron Length:
3325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAATC
5'SS Class:
major
3'SS Sequence:
TTTCACATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATTT
Flanking Amino Acid:
APEMCPIRSTDEYRKLCTVA
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
73.4
35.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.6
0.62
0.8
75
34.2
Minor 5ss
44.3
-0.6
2.8
57.9
40.9
Minor BPS
49
0
2
76.74
40.1

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950