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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1267189_1275502_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1267189 - 1275502
Intron Length:
8314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GATTATGTATCC
Flanking Amino Acid:
YTAPDGLKCIDVRPGYCFSS
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
78.7
0.65
0.9
77.3
31.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
43.6
-0.5
2.3
57.11
41.4

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950